Wii: http://www.fileserve.com/file/XDyUmkz
GC: http://www.fileserve.com/file/PthRBnS
Saleae logic software download links:
32bit: http://www.saleae.com/downloads/logic/L ... 2-bit).exe
64 bit: http://www.saleae.com/downloads/logic/L ... 4-bit).exe
I should probably explain how I went about this so here we go. I have included "boot sequence" analysis files for both systems. These files correspond to all other pins on said system other than the bidirectional data lines (DID0-7) the reason for this is to help determine whether we have all the other pins matched up correctly. Since the Wii and GC boot differently what I did was to just boot the Wii up normal with Zelda: TP GC disc inserted and let it idle at the channel menu. For the Gamecube what I did was boot the system with the disc cover open and close it right after boot (also with Zelda: TP inserted) to get roughly the same effect as we do on the Wii. This way the GC does not automatically boot into the game but sits idle till the game is started. So in short these files are just the boot sequence where the disc gets mounted but does not actually start the game.
For the DID0-7 lines I used 2 different games. Zelda: TP and Zelda Collectors Edition. For both games I booted into the game and started the logic as soon (roughly) as the Nintendo logo showed up on the screen. Please keep in mind though that we are dealing with units of time measurement sometimes smaller than microseconds so the point at which I started the analyzer may vary seemingly greatly between sessions (making it hard to find the same points in the game between systems).
I ran each different analysis twice to make sure there are no discrepancies and for the Wii side I also ran some analysis with the sundriver and the DVD drive. Hopefully the way that I have named the files makes things clear as to what was going on at the time. I have not had a chance to make any comparisons between the data yet so you are essentially getting this info at the same time I am. Any help interpreting all of this and matching things up is greatly appreciated

Off to do my taxes now and hopefully have time to pour over this later.